Open fbreitwieser opened 6 years ago
Is the score between 0 and 1 calculated as taxon_kmers / unambiguous_kmers * (1 - unassigned_kmers / unambiguous_kmers)
?
Yep. unambiguous_kmers
is all k-mers without an N
.
unambiguous_kmers = unassigned_kmers + taxon_kmers + kmers + assigned_to_other_taxa
Re #7 : Consider adding read-level scores and thresholds. Possible scores:
kraken-filter
score:taxon_kmers / unambiguous_kmers
Read get promoted to higher taxa until a threshold is met.