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fbreitwieser / pavian

🌈 Interactive analysis of metagenomics data
https://doi.org/10.1093/bioinformatics/btz715
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Error in &&: 'length = 29' in coercion to 'logical(1) #106

Closed artiman16 closed 1 year ago

artiman16 commented 1 year ago

Hello! Advise me, why I get this error after R upgrading to 4.3.0:

Listening on http://127.0.0.1:6129 The name provided ('sun-o') does not correspond to a known icon [апр28 16:17] Started new shiny session #1 ( session(s) running) [апр28 16:20] Reading files in /tmp/Rtmpjxgb94/38dd9caaf64e7b6a1d5735bc Предупреждение: Error in &&: 'length = 29' in coercion to 'logical(1)' 3: runApp 2: runUrl 1: shiny::runGitHub [апр28 16:20] Exiting session #1

bheimbu commented 1 year ago

hi @fbreitwieser,

I get the same error message. Any help is highly appreciated,

Cheers Bastian

ktmbiome-niaid commented 1 year ago

Hi, I am also running into the same error message. This is occurring when trying to upload files. I have tried selecting files individually and selecting a full directory. I have also tried only uploading one file at a time, and uploading from an Rstudio Server environment or Rstudio on my desktop.

Edit to add: this also occurs when I ask the app to use the provided sample data. And I also noticed that the app itself hasn't been updated since 2021 (and I've used Pavian since then -- though not in my current environment), so I wonder if it's an update of R that's changed how the app works? (I'm running R-4.2.2 which isn't as up-to-date as @artiman16)

Many thanks for any thoughts you have! --Katie

artiman16 commented 1 year ago

Hi! I tried push the app from docker and it was succesfull. Try!