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fbreitwieser / pavian

🌈 Interactive analysis of metagenomics data
https://doi.org/10.1093/bioinformatics/btz715
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kaiju to pavian #108

Open dnlrxn opened 1 year ago

dnlrxn commented 1 year ago

Re: issue #11 Is there an updated script available to convert kaiju outputs into the correct "kreport"-styled input format for pavian (given that the kraken-report has been replaced by kaiju2table and the solution mentioned in issue #11 is outdated now)?

fbreitwieser commented 9 months ago

Hi @dnlrxn , could you provide some information on the kaiju2table format, links to a description and ideally sample data? Then the feature to support those tables could be implemented.

dnlrxn commented 9 months ago

Thank you! I realised that kaiju's output can easily be formatted using krakentools (make_kreport.py) - that will do!