Error in .graphValueChange: could not find function ".graphValueChange"

[ghost]

Hi,

When I am loading my kraken report file in the following error comes and the session gets closed.

However, the same file is working well with docker instance.

pavian::runApp(port=5000)

Listening on http://127.0.0.1:5000 [May10 13:40] Started new shiny session #1 (1 session(s) running) [May10 13:40] Reading files in /tmp/RtmpFKCbSe/d256e6438fb70ed911f4b839 [May10 13:40] Reading 1 reports ... Warning: Error in .graphValueChange: could not find function ".graphValueChange" [No stack trace available] [May10 13:40] Exiting session #1

sessioninfo()

R version 3.4.0 (2017-04-21) Platform: x86_64-pc-linux-gnu (64-bit) Running under: Ubuntu 16.04.5 LTS

Matrix products: default BLAS: /usr/lib/openblas-base/libblas.so.3 LAPACK: /usr/lib/libopenblasp-r0.2.18.so

locale: [1] LC_CTYPE=en_IN.UTF-8 LC_NUMERIC=C LC_TIME=en_IN.UTF-8 LC_COLLATE=en_IN.UTF-8 LC_MONETARY=en_IN.UTF-8
[6] LC_MESSAGES=en_IN.UTF-8 LC_PAPER=en_IN.UTF-8 LC_NAME=C LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_IN.UTF-8 LC_IDENTIFICATION=C

attached base packages: [1] stats graphics grDevices utils datasets methods base

other attached packages: [1] shiny_1.3.2 readr_1.3.1

loaded via a namespace (and not attached): [1] Rcpp_1.0.0 pillar_1.3.1 compiler_3.4.0 later_0.8.0 plyr_1.8.4 bindr_0.1.1
[7] shinyWidgets_0.4.8 shinyjs_1.0 tools_3.4.0 digest_0.6.18 jsonlite_1.5 tibble_1.4.2
[13] gtable_0.2.0 pkgconfig_2.0.1 rlang_0.3.0.1 rstudioapi_0.7 crosstalk_1.0.0 yaml_2.2.0
[19] bindrcpp_0.2.2 dplyr_0.7.8 htmlwidgets_1.3 hms_0.4.2 DT_0.6 shinydashboard_0.7.1
[25] grid_3.4.0 tidyselect_0.2.5 shinyFileTree_0.0.0.9000 glue_1.3.0 R6_2.2.2 pavian_0.8.4
[31] ggplot2_3.1.0 purrr_0.2.3 magrittr_1.5 sankeyD3_0.3.2 scales_1.0.0 promises_1.0.1
[37] htmltools_0.3.6 assertthat_0.2.0 xtable_1.8-2 rhandsontable_0.3.7 mime_0.6 colorspace_1.3-2
[43] httpuv_1.5.1 lazyeval_0.2.1 munsell_0.5.0 crayon_1.3.4

[BurinkiWU]

Hi, I also met the same problem of "[May10 13:40] Started new shiny session #1 (1 session(s) running) [May10 13:40] Reading files in /tmp/RtmpFKCbSe/d256e6438fb70ed911f4b839 [May10 13:40] Reading 1 reports ... Warning: Error in .graphValueChange: could not find function ".graphValueChange" [No stack trace available] [May10 13:40] Exiting session #1" As following, my software info: R version 3.5.1 Platform: windows 10 (64-bit) Could you help us to fix this problem?

[sconlan]

I'm having the same issue. RStudio (R version 3.5.0 (2018-04-23))

pavian::runApp(port=5000) Loading required package: shiny Warning: package ‘shiny’ was built under R version 3.5.2 Loading required package: pavian

Attaching package: ‘pavian’

The following object is masked from ‘package:shiny’:

runApp

The following object is masked from ‘package:phyloseq’:

filter_taxa

The following object is masked from ‘package:BiocGenerics’:

normalize

Loading required package: Rsamtools Warning: package ‘Rsamtools’ was built under R version 3.5.2 Loading required package: GenomeInfoDb Warning: package ‘GenomeInfoDb’ was built under R version 3.5.2 Loading required package: GenomicRanges Warning: package ‘GenomicRanges’ was built under R version 3.5.1

Listening on http://127.0.0.1:5000 [Aug30 10:03] Started new shiny session #1 (1 session(s) running) [Aug30 10:06] Reading files in /var/folders/h5/kzbqz8hs5dz1q1234dltgkxh0pbxfz/T//Rtmpn720Fq/51ed2c2489fa88d2f4cb3f01 [Aug30 10:06] Reading 1 reports ... Warning: Error in .graphValueChange: could not find function ".graphValueChange" 76: .subset2(x, "impl")$set 75: $<-.reactivevalues 73: observeEventHandler 2: shiny::runApp 1: pavian::runApp [Aug30 10:06] Exiting session #1

[fbreitwieser]

Thanks all for reporting this issue, I'm looking into it