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fbreitwieser / pavian

🌈 Interactive analysis of metagenomics data
https://doi.org/10.1093/bioinformatics/btz715
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Loading KrakenUniq report-file fails #55

Open ZhouHui0916 opened 5 years ago

ZhouHui0916 commented 5 years ago

Hi fbreitwieser ,The web site https://fbreitwieser.shinyapps.io/pavian/ can not support krakenuniq --report-file .Or i missed something. The formats are as follows.

% reads taxReads kmers dup cov taxID rank taxName 76.28 5141281 5141281 3266800457 1.1 1.12e+05 0 no rank unclassified 23.72 1598943 241 2295577120 1.06 0.105 1 no rank root 23.71 1597928 564 2295577120 1.06 0.1061 131567 no rank cellular organisms 15.73 1060337 0 2258287516 1.05 0.9016 2759 superkingdom Eukaryota 15.73 1060337 0 2258287516 1.05 0.9016 33154 no rank Opisthokonta 15.73 1060337 0 2258287516 1.05 0.9016 33208 kingdom Metazoa

fanninpm commented 3 years ago

@fbreitwieser The shinyapps instance is currently running pavian_0.8.4. Is it feasible to upgrade that instance to the latest version?