QG-phy
commented
2 years ago Here is the CMakeError.log:
Performing C SOURCE FILE Test CMAKE_HAVE_LIBC_PTHREAD failed with the following output: Change Dir: /root/soft/SpinParser/build/CMakeFiles/CMakeTmp
Run Build Command(s):/usr/bin/make cmTC_de9a1/fast && /usr/bin/make -f CMakeFiles/cmTC_de9a1.dir/build.make CMakeFiles/cmTC_de9a1.dir/build
make[1]: Entering directory '/root/soft/SpinParser/build/CMakeFiles/CMakeTmp'
Building C object CMakeFiles/cmTC_de9a1.dir/src.c.o
/usr/bin/cc -DCMAKE_HAVE_LIBC_PTHREAD -o CMakeFiles/cmTC_de9a1.dir/src.c.o -c /root/soft/SpinParser/build/CMakeFiles/CMakeTmp/src.c
Linking C executable cmTC_de9a1
/usr/bin/cmake -E cmake_link_script CMakeFiles/cmTC_de9a1.dir/link.txt --verbose=1
/usr/bin/cc -DCMAKE_HAVE_LIBC_PTHREAD CMakeFiles/cmTC_de9a1.dir/src.c.o -o cmTC_de9a1
/usr/bin/ld: CMakeFiles/cmTC_de9a1.dir/src.c.o: in function main': src.c:(.text+0x46): undefined reference topthread_create'
/usr/bin/ld: src.c:(.text+0x52): undefined reference to pthread_detach' /usr/bin/ld: src.c:(.text+0x63): undefined reference topthread_join'
collect2: error: ld returned 1 exit status
make[1]: [CMakeFiles/cmTC_de9a1.dir/build.make:87: cmTC_de9a1] Error 1
make[1]: Leaving directory '/root/soft/SpinParser/build/CMakeFiles/CMakeTmp'
make: [Makefile:121: cmTC_de9a1/fast] Error 2
Source file was:
include
void test_func(void data) { return data; }
int main(void) { pthread_t thread; pthread_create(&thread, NULL, test_func, NULL); pthread_detach(thread); pthread_join(thread, NULL); pthread_atfork(NULL, NULL, NULL); pthread_exit(NULL);
return 0; }
Determining if the function pthread_create exists in the pthreads failed with the following output: Change Dir: /root/soft/SpinParser/build/CMakeFiles/CMakeTmp
Run Build Command(s):/usr/bin/make cmTC_253e1/fast && /usr/bin/make -f CMakeFiles/cmTC_253e1.dir/build.make CMakeFiles/cmTC_253e1.dir/build make[1]: Entering directory '/root/soft/SpinParser/build/CMakeFiles/CMakeTmp' Building C object CMakeFiles/cmTC_253e1.dir/CheckFunctionExists.c.o /usr/bin/cc -DCHECK_FUNCTION_EXISTS=pthread_create -o CMakeFiles/cmTC_253e1.dir/CheckFunctionExists.c.o -c /usr/share/cmake-3.16/Modules/Chec Linking C executable cmTC_253e1 /usr/bin/cmake -E cmake_link_script CMakeFiles/cmTC_253e1.dir/link.txt --verbose=1 /usr/bin/cc -DCHECK_FUNCTION_EXISTS=pthread_create CMakeFiles/cmTC_253e1.dir/CheckFunctionExists.c.o -o cmTC_253e1 -lpthreads /usr/bin/ld: cannot find -lpthreads collect2: error: ld returned 1 exit status make[1]: [CMakeFiles/cmTC_253e1.dir/build.make:87: cmTC_253e1] Error 1 make[1]: Leaving directory '/root/soft/SpinParser/build/CMakeFiles/CMakeTmp' make: [Makefile:121: cmTC_253e1/fast] Error
shishirkrpandey
fbuessen
Hi, I did all the steps in the installation of your document. but it failed at the step
cmake -DCMAKE_BUILD_TYPE=Release -DCMAKE_INSTALL_PREFIX=../install ../SpinParserSourceHere， i pasted the error message.
-- The C compiler identification is GNU 9.4.0 -- The CXX compiler identification is GNU 9.4.0 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found Boost: /usr/lib/x86_64-linux-gnu/cmake/Boost-1.71.0/BoostConfig.cmake (found suitable version "1.71.0", minimum required is "1.71") found components: regex thread system program_options filesystem timer date_time unit_test_framework -- HDF5: Using hdf5 compiler wrapper to determine C configuration -- Found HDF5: /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so;/usr/lib/x86_64-linux-gnu/libpthread.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.so;/usr/lib/x86_64-linux-gnu/libm.so (found version "1.10.4") found components: C -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") CMake Error in /root/soft/SpinParser/build/CMakeFiles/CMakeTmp/CMakeLists.txt: Imported target "MPI::MPI_C" includes non-existent path
in its INTERFACE_INCLUDE_DIRECTORIES. Possible reasons include:
The path was deleted, renamed, or moved to another location.
An install or uninstall procedure did not complete successfully.
The installation package was faulty and references files it does not provide.
CMake Error in /root/soft/SpinParser/build/CMakeFiles/CMakeTmp/CMakeLists.txt: Imported target "MPI::MPI_C" includes non-existent path
in its INTERFACE_INCLUDE_DIRECTORIES. Possible reasons include:
The path was deleted, renamed, or moved to another location.
An install or uninstall procedure did not complete successfully.
The installation package was faulty and references files it does not provide.
CMake Error at /usr/share/cmake-3.16/Modules/FindMPI.cmake:1194 (try_compile): Failed to generate test project build system. Call Stack (most recent call first): /usr/share/cmake-3.16/Modules/FindMPI.cmake:1245 (_MPI_try_staged_settings) /usr/share/cmake-3.16/Modules/FindMPI.cmake:1505 (_MPI_check_lang_works) CMakeLists.txt:29 (find_package)
-- Configuring incomplete, errors occurred! See also "/root/soft/SpinParser/build/CMakeFiles/CMakeOutput.log". See also "/root/soft/SpinParser/build/CMakeFiles/CMakeError.log".