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fdetsch / MODIS

Download and processing framework for MODIS imagery. The package provides automated access to the global online data archives LP DAAC, LAADS and NSIDC as well as processing capabilities such as file conversion, mosaicking, subsetting and time series.
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Downloading MCD64A1 for a region and I get $ operator is invalid for atomic vectors #79

Open lsaravia opened 4 years ago

lsaravia commented 4 years ago

I am trying to download MCD64A1 with these commands 

require(MODIS)

aus <- getTile("australia")

internal_info <- getProduct("MCD64A1") 
MODISoptions(MODISserverOrder=c("LPDAAC","LAADS"))
MODISoptions(localArcPath = "Data/hdf")
MODISoptions(outDirPath = "Data")

r64 <- runGdal("MCD64A1",begin="2019-10-01" ,end="2020-01-31",extent = aus, SDSstring = "1")

and get 

########################
outProj          =  asIn  (if applicable, derived from Raster*/Spatial*/sf* object)
pixelSize        =  asIn  (if applicable, derived from Raster* object)
resamplingType   =  near 
Output directory =  /home/leonardo/Academicos/GitProjects/AuFIres/Data/MCD64A1.006_20200123125421  (no 'job' name specified, generated (date/time based))
########################
Local structure is up-to-date. Using offline information!
Error: $ operator is invalid for atomic vectors
fdetsch commented 4 years ago

Works on my end, what's your sessionInfo()? Mine is 

sessionInfo()
R version 3.6.2 (2019-12-12)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows 10 x64 (build 18363)

Matrix products: default

locale:
[1] LC_COLLATE=German_Germany.1252  LC_CTYPE=German_Germany.1252    LC_MONETARY=German_Germany.1252
[4] LC_NUMERIC=C                    LC_TIME=German_Germany.1252    

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
[1] MODIS_1.1.6   raster_3.0-7  sp_1.3-2      mapdata_2.3.0 maps_3.3.0   

loaded via a namespace (and not attached):
 [1] clisymbols_1.2.0   remotes_2.1.0      sf_0.8-0           lattice_0.20-38    testthat_2.3.1    
 [6] usethis_1.5.1      htmltools_0.4.0    rlang_0.4.2        pkgbuild_1.0.6     e1071_1.7-3       
[11] nloptr_1.2.1       later_1.0.0        foreign_0.8-72     glue_1.3.1         withr_2.1.2       
[16] DBI_1.1.0          sessioninfo_1.1.1  prompt_1.0.0       rgeos_0.5-2        mapedit_0.5.0     
[21] devtools_2.2.1     codetools_0.2-16   memoise_1.1.0      callr_3.4.0        fastmap_1.0.1     
[26] httpuv_1.5.2       ps_1.3.0           maptools_0.9-9     class_7.3-15       parallel_3.6.2    
[31] curl_4.3           fansi_0.4.1        Rcpp_1.0.3         KernSmooth_2.23-16 xtable_1.8-4      
[36] backports_1.1.5    promises_1.1.0     classInt_0.4-2     desc_1.2.0         pkgload_1.0.2     
[41] mime_0.8           fs_1.3.1           ptw_1.9-15         digest_0.6.23      processx_3.4.1    
[46] shiny_1.4.0        grid_3.6.2         rprojroot_1.3-2    rgdal_1.4-8        cli_2.0.1         
[51] tools_3.6.2        bitops_1.0-6       magrittr_1.5       crayon_1.3.4       ellipsis_0.3.0    
[56] prettyunits_1.1.0  assertthat_0.2.1   rstudioapi_0.10    R6_2.4.1           units_0.6-5       
[61] compiler_3.6.2
lsaravia commented 4 years ago

Mine is below, I will try updating raster and sp. 

> sessionInfo()
R version 3.6.2 (2019-12-12)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Ubuntu 16.04.6 LTS

Matrix products: default
BLAS:   /usr/lib/libblas/libblas.so.3.6.0
LAPACK: /usr/lib/lapack/liblapack.so.3.6.0

locale:
 [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C               LC_TIME=es_AR.UTF-8        LC_COLLATE=en_US.UTF-8     LC_MONETARY=es_AR.UTF-8   
 [6] LC_MESSAGES=en_US.UTF-8    LC_PAPER=es_AR.UTF-8       LC_NAME=C                  LC_ADDRESS=C               LC_TELEPHONE=C            
[11] LC_MEASUREMENT=es_AR.UTF-8 LC_IDENTIFICATION=C       

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
[1] MODIS_1.1.6   raster_3.0-2  sp_1.3-1      mapdata_2.3.0 maps_3.3.0   

loaded via a namespace (and not attached):
 [1] remotes_2.1.0      sf_0.8-0           lattice_0.20-38    testthat_2.1.1     htmltools_0.3.6    usethis_1.5.0      rlang_0.4.2       
 [8] pkgbuild_1.0.3     e1071_1.7-1        nloptr_1.2.1       later_0.8.0        foreign_0.8-74     glue_1.3.1         withr_2.1.2       
[15] DBI_1.0.0          sessioninfo_1.1.1  rgeos_0.4-3        mapedit_0.5.0      devtools_2.2.0     htmlwidgets_1.3    codetools_0.2-16  
[22] memoise_1.1.0      callr_3.2.0        httpuv_1.5.1       ps_1.3.0           maptools_0.9-5     class_7.3-15       parallel_3.6.2    
[29] curl_3.3           fansi_0.4.1        Rcpp_1.0.3         KernSmooth_2.23-16 xtable_1.8-4       backports_1.1.5    promises_1.0.1    
[36] DT_0.9             classInt_0.4-2     desc_1.2.0         pkgload_1.0.2      mime_0.6           fs_1.3.0           ptw_1.9-13        
[43] packrat_0.5.0      digest_0.6.23      processx_3.3.0     shiny_1.3.2        grid_3.6.2         rprojroot_1.3-2    rgdal_1.4-4       
[50] cli_2.0.1          tools_3.6.2        bitops_1.0-6       magrittr_1.5       crayon_1.3.4       ellipsis_0.3.0     prettyunits_1.0.2 
[57] assertthat_0.2.1   rstudioapi_0.10    R6_2.4.0           units_0.6-3        compiler_3.6.2
lsaravia commented 4 years ago

Updated, and tried again

r64 <- runGdal("MCD64A1",begin="2019-01-01" ,end="2020-01-31",extent = aus, SDSstring = "1")
########################
outProj          =  asIn  (if applicable, derived from Raster*/Spatial*/sf* object)
pixelSize        =  asIn  (if applicable, derived from Raster* object)
resamplingType   =  near 
Output directory =  /home/leonardo/Academicos/GitProjects/AuFIres/Data/MCD64A1.006_20200124162934  (no 'job' name specified, generated (date/time based))
########################
Downloading structure on 'LPDAAC' for: MCD64A1.006
Error: $ operator is invalid for atomic vectors
> sessionInfo()
R version 3.6.2 (2019-12-12)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Ubuntu 16.04.6 LTS

Matrix products: default
BLAS:   /usr/lib/libblas/libblas.so.3.6.0
LAPACK: /usr/lib/lapack/liblapack.so.3.6.0

locale:
 [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C               LC_TIME=es_AR.UTF-8        LC_COLLATE=en_US.UTF-8     LC_MONETARY=es_AR.UTF-8   
 [6] LC_MESSAGES=en_US.UTF-8    LC_PAPER=es_AR.UTF-8       LC_NAME=C                  LC_ADDRESS=C               LC_TELEPHONE=C            
[11] LC_MEASUREMENT=es_AR.UTF-8 LC_IDENTIFICATION=C       

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
[1] MODIS_1.1.6   raster_3.0-7  sp_1.3-2      mapdata_2.3.0 maps_3.3.0   

loaded via a namespace (and not attached):
 [1] remotes_2.1.0      sf_0.8-0           lattice_0.20-38    testthat_2.1.1     htmltools_0.3.6    usethis_1.5.0      rlang_0.4.2       
 [8] pkgbuild_1.0.3     e1071_1.7-1        nloptr_1.2.1       later_0.8.0        foreign_0.8-74     glue_1.3.1         withr_2.1.2       
[15] DBI_1.0.0          sessioninfo_1.1.1  rgeos_0.4-3        mapedit_0.5.0      devtools_2.2.0     htmlwidgets_1.3    codetools_0.2-16  
[22] memoise_1.1.0      callr_3.2.0        httpuv_1.5.1       ps_1.3.0           maptools_0.9-5     class_7.3-15       parallel_3.6.2    
[29] curl_3.3           fansi_0.4.1        Rcpp_1.0.3         KernSmooth_2.23-16 xtable_1.8-4       backports_1.1.5    promises_1.0.1    
[36] DT_0.9             classInt_0.4-2     desc_1.2.0         pkgload_1.0.2      mime_0.6           fs_1.3.0           ptw_1.9-13        
[43] packrat_0.5.0      digest_0.6.23      processx_3.3.0     shiny_1.3.2        grid_3.6.2         rprojroot_1.3-2    rgdal_1.4-4       
[50] cli_2.0.1          tools_3.6.2        bitops_1.0-6       magrittr_1.5       crayon_1.3.4       ellipsis_0.3.0     prettyunits_1.0.2 
[57] assertthat_0.2.1   rstudioapi_0.10    R6_2.4.0           units_0.6-3        compiler_3.6.2
fdetsch commented 4 years ago

Any updates on this one?