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fedarko / strainFlye

Pipeline for analyzing (rare) mutations in metagenome-assembled genomes
BSD 3-Clause "New" or "Revised" License
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Remove info flag to BCF files for "unreasonable" positions :| #46

Closed fedarko closed 2 years ago

fedarko commented 2 years ago

Need some way to avoid these positions during FDR estimation, at least for nonsyn / nonsense methods.

edit: actually never mind this is a dumb idea, this information needs to be available for every position, not just mutated ones. Uh, undo this, and just pass the alignment to commands that need to know this info (FDR estimation, etc.)