fedarko / strainFlye

Pipeline for analyzing (rare) mutations in metagenome-assembled genomes
BSD 3-Clause "New" or "Revised" License
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Replace lists of numbers used for diversity index p / r values with multiple=True? #51

Open fedarko opened 2 years ago

fedarko commented 2 years ago

This way, we can replace the --div-index-p-list "25,50,100,200,500,1000,2500,5000" syntax with e.g. -dip 25 -dip 50 -dip 100 ...

That's actually more of a pain to write. I guess the benefit is that we could apply click's automatic IntRange checking to each value passed? But this already works as is, so I guess this is kind of an "if it ain't broke don't fix it" situation.