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fedarko / strainFlye

Pipeline for analyzing (rare) mutations in metagenome-assembled genomes
BSD 3-Clause "New" or "Revised" License
8 stars 1 forks source link

pipeline PNG might be too high quality #56

Closed fedarko closed 1 year ago

fedarko commented 2 years ago

proobably overkill lol, it actually slowed down chromium a bit

fedarko commented 1 year ago

Replacing the pipeline with a fancy Mermaid diagram (which has the upsides of being [1] interactive, and [2] more detailed than the high-level figure shown in the paper).

For reference, here's a screenshot of the entire pipeline figure as of writing. (You can open the image in a new tab and zoom in on it, but it's a bit blurry.)

mermaid-diagram-2023-05-02-224608

Other options: here's a link to this pipeline in the Mermaid Live Editor, and here's a link to a kroki visualization of it as a SVG. Both of these seem easy to view.

fedarko commented 1 year ago

Also, just for reference, here's the (maybe-too-high-resolution [as in the image filesize is too large and can actually take a few seconds to load ._. {in terms of technical detail it's actually somewhat low-resolution}]) pipeline diagram shown as Figure 1 of the paper:

strainflye-pipeline