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fedarko / strainFlye

Pipeline for analyzing (rare) mutations in metagenome-assembled genomes
BSD 3-Clause "New" or "Revised" License
8 stars 1 forks source link

Fix CI warnings from GitHub Actions #61

Open fedarko opened 2 years ago

fedarko commented 2 years ago

Mainly, I see the following two:

Node.js 12 actions are deprecated. For more information see: https://github.blog/changelog/2022-09-22-github-actions-all-actions-will-begin-running-on-node16-instead-of-node12/. Please update the following actions to use Node.js 16: conda-incubator/setup-miniconda, codecov/codecov-action, conda-incubator/setup-minicondaShow less
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/

I think we can probably just bump the version numbers in the .github/workflows/main.yml file to fix these? (None of my code for this project uses Node.js, at least.)