Probably the easiest thing is just asking the user to run this first, then use the resulting FASTA of contigs as the input for later steps (alignment, calling, ...)
But if we wanna be really fancy we can accept GFA files directly and do the conversion ourselves. ... But that's probs too much work for right now
Probably the easiest thing is just asking the user to run this first, then use the resulting FASTA of contigs as the input for later steps (alignment, calling, ...)
But if we wanna be really fancy we can accept GFA files directly and do the conversion ourselves. ... But that's probs too much work for right now