Automate MATLAB configuration

federatedcloud / COBRAContainers

Containers and scripts for COBRA modeling

BSD 3-Clause "New" or "Revised" License

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Automate MATLAB configuration #4

Open bbarker opened 5 years ago

bbarker commented 5 years ago

Essentially need to write a MATLAB script to do at least the following:

[ ] Host matlab priles private - can we fetch via sftp?
[ ] Repackage MATLAB as something living in the /nix/store (need to resize disk to test this)
[ ] Set up and test gurobi, including savepath
[ ] Set up and test COBRA with gurobi, including initCobraToolBox

bbarker commented 5 years ago

for COBRAToolbox, initCobraToolBox checks to see if it is a git repository and writable, so not sure we can do this as i think initCobraToolBox must be run each time.

bbarker commented 5 years ago

Part of this is being prototyped at https://github.com/federatedcloud/DouglasMetabolicModels/blob/master/initDMM.m