federicomarini / GeneTonic

Enjoy your transcriptomic data and analysis responsibly - like sipping a cocktail
https://federicomarini.github.io/GeneTonic
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Ridge genesets #47

Closed federicomarini closed 1 year ago

federicomarini commented 1 year ago

This branch adds some functionality to the enhance_table function, in a way that the summaries can now be done also as ridge plots, colored optionally by the z_score of each geneset.

Looks like more or less like this

image

... so that the individual genes contributing to the density are still stylized visible below each profile.

codecov-commenter commented 1 year ago

Codecov Report

Merging #47 (3347231) into master (c32b540) will increase coverage by 0.39%. The diff coverage is 100.00%.

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@@             Coverage Diff             @@
##           master       #47      +/-   ##
===========================================
+ Coverage   99.60%   100.00%   +0.39%     
===========================================
  Files          22        22              
  Lines        2271      2320      +49     
===========================================
+ Hits         2262      2320      +58     
+ Misses          9         0       -9     
Impacted Files Coverage Δ
R/enhance_table.R 100.00% <100.00%> (ø)
R/gs_fuzzy.R 100.00% <100.00%> (ø)
R/gs_summaries.R 100.00% <100.00%> (ø)
R/gs_dendro.R 100.00% <0.00%> (+12.50%) :arrow_up:

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