Closed clbenoit closed 5 years ago
Hi Elendill, I'll have a look into it!
While using the airway
demo dataset I am not able to trigger this behaviour and reproduce it - the sample removal works as expected with no errors.
What are you using as input, can you provide me with some more detail?
Federico
Hi Frederico,
I am using the files that you can find attached as input. Then selecting the "group" variable for the design before to construct the dds object.
I am using the server version edition of the app. Thanks you in advance for your advice !
Clément
Ok removing the "run_id" entry in my SAMPLE_PLAN.txt header fixed the issue. I am sorry to ask you for a not so complicated problem. Hope it will further help users !
Clément
Hi Clément,
the most important part is that the issue is now resolved :)
I'm closing this then, and hope that any other user will be able to find this as a helping record.
Federico
Hi everyone,
When trying to remove outliers from the "Optionnal step box". I get the following error :
Warning: Error in .validate_names: assay colnames() must be NULL or identical to colData rownames()
However everything works fine when constructing the dds object if i do not remove any sample...
Here is the code activated when clicking on the boxe's button :
I do not understand why it's not working, colnames seem to be updated before the new DESeqDataSetFromMatrix function calling. Do you have any idea ?
Thanks you !
Elendill