Limit analysis to genes available in TCGA data - Githubissues

federicomarini / quantiseqr

https://federicomarini.github.io/quantiseqr/

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Limit analysis to genes available in TCGA data #11

Open FFinotello opened 3 years ago

FFinotello commented 3 years ago

To be robust to different RNA-seq library types, contaminants, etc.

Needs:

Internal list of genes to be considered
Option restrictGenes=TRUE, considered before TPM normalization