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feelpp / benchmarking

Benchmarking
https://feelpp.github.io/benchmarking/
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resolves: Support apptainer #98

Open JavierCladellas opened 1 week ago

JavierCladellas commented 1 week ago

-Closes #96

Benchmarking on apptainer is now supported.

To do so, one must add the following to the application config file:

    "platform": {
        "type":"apptainer",
        "image": "oras://ghcr.io/my-example-image",
        "options": [
            "--home ...",// The directory to mount as apptainer HOME
            "--bind ... " //Any other directories to mount
        ]
    }

Also, gaya config now counts with a specific apptainer environment, so it needs to be specified on the machine config as: 

    "valid_prog_environs":["apptainer"], //Or builtin for the "native/built-in" version
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JavierCladellas commented 1 week ago

When trying to benchmark kub with Apptainer on Gaya, I have the following bug: 

/usr/bin/feelpp_kub_cem: error while loading shared libraries: libboost_program_options.so.1.74.0: cannot open shared object file: No such file or directory

Do you have any idea on how to fix it ? @prudhomm @vincentchabannes It seems that the image has version 1.83.0 and there is a mismatch.

prudhomm commented 1 week ago

@JavierCladellas what is the other branches that have been included in this PR ? there are a lot changes not related to apptainer

JavierCladellas commented 1 week ago

@JavierCladellas what is the other branches that have been included in this PR ? there are a lot changes not related to apptainer

The branch for this PR is based on https://github.com/feelpp/benchmarking/tree/77-aggregate-metrics. Changes should be small after marging https://github.com/feelpp/benchmarking/pull/93