search

feiyoung / PRECAST

an efficient data integration method for multiple spatial transcriptomics data with non- cluster-relevant effects such as the complex batch effects.
GNU General Public License v3.0
9 stars 3 forks source link

where can I find the PRECAST corrected gene expression data? #23

Closed abraham-abin13 closed 1 month ago

abraham-abin13 commented 2 months ago

In my analysis, i have an object preObj which is created after running IntegrateSpaData(). preObj has an assay called "PRE_CAST".

To access the PRECAST corrected gene expression, I am running the preObj[["PRE_CAST"]]$data command.

Is this the correct location of the corrected gene expression?

feiyoung commented 2 months ago

Yes, it is.