felixleopoldo / benchpress

A Snakemake workflow to run and benchmark structure learning (a.k.a. causal discovery) algorithms for probabilistic graphical models.
https://benchpressdocs.readthedocs.io
GNU General Public License v2.0
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Problem with time limit #108

Open felixleopoldo opened 10 months ago

felixleopoldo commented 10 months ago

It's basically working but I find that when I hit the timelimit then rather than getting "None" in my time file, the file is empty. Not sure what is going on there. This is causing problems in combine_ROC_data.R since we get an error: Error in summarise(): ℹ In argument: time_median = median(time). ℹ In group 1: id = "gobnilp-neat-bge", adjmat = "pcalg_randdag/max_parents=5/n=20/d=4/par1=None/par2=None/method=er/DAG=True", parameters = "sem_params/min=0.25/max=1", data = "iid/n=5000/standardized=True", alpha_mu = 0.01.