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fenchri / edge-oriented-graph

Source code for the EMNLP 2019 paper: "Connecting the Dots: Document-level Relation Extraction with Edge-oriented Graphs"
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Error in Data Processing #23

Closed amirveyseh closed 3 years ago

amirveyseh commented 3 years ago

In data processing, after runing sh process_cdr.sh, I got this error: 'FileNotFoundError: [Errno 2] No such file or directory: 'temp_file.split.txt''

The full error is:

11923it [00:00, 45980.01it/s] Processing Doc_ID 227508: 0%| | 0/500 [00:00<?, ?it/s] Traceback (most recent call last): File "process.py", line 123, in <module> main() File "process.py", line 62, in main split_sents = sentence_split_genia(orig_sentences) File "/disk/apouranb/RAMS/RAMS/classification_code/OT/EoG/edge-oriented-graph/data_processing/tools.py", line 248, in sentence_split_genia with open('temp_file.split.txt', 'r') as ifile: FileNotFoundError: [Errno 2] No such file or directory: 'temp_file.split.txt' Loading examples from ../data/CDR/processed/Training.data Mesh entities: 28470 Positive Docs: 0 Negative Docs: 0 Positive Count: 0 Initial Negative Count: 0 Final Negative Count: 0 Hyponyms: 0 0 12103it [00:00, 45581.38it/s] Processing Doc_ID 6794356: 0%| | 0/500 [00:00<?, ?it/s] Traceback (most recent call last): File "process.py", line 123, in <module> main() File "process.py", line 62, in main split_sents = sentence_split_genia(orig_sentences) File "/disk/apouranb/RAMS/RAMS/classification_code/OT/EoG/edge-oriented-graph/data_processing/tools.py", line 248, in sentence_split_genia with open('temp_file.split.txt', 'r') as ifile: FileNotFoundError: [Errno 2] No such file or directory: 'temp_file.split.txt' Loading examples from ../data/CDR/processed/Development.data Mesh entities: 28470 Positive Docs: 0 Negative Docs: 0 Positive Count: 0 Initial Negative Count: 0 Final Negative Count: 0 Hyponyms: 0 0

fenchri commented 3 years ago

Hi,

Did you install geniass correctly along with the requirements? I re-ran the process and I don't see the error appearing. Could you remove the processed folder and try again?

amirveyseh commented 3 years ago

Thanks, I re-installed geniass and it worked.