This pull request standardizes the use of axes in random transforms. It also adds random axes options in the RandomMotion transform. Includes the following changes:
Update to_tuple to see strings as singular values (this also required adding number of changes to checks for strings in areas where numbers are necessary). Tests all pass.
Add parse_axes and ensure_axes_indices to base Transform class. Standardizes the use of axes in all transforms. Capable of accepting integer and specific string axis values. This is now used in RandomFlip, RandomMotion, RandomGhosting, RandomAnisotropy. Tests were added to check these additional axis values.
Added a random axis parameter to RandomMotion. This now works properly on 2D images and can apply motion to any axis of 3D images. Also removed redundant change between matrix and transform.
Checklist
[x] I have read the CONTRIBUTING docs and have a developer setup (especially important are pre-commitand pytest)
[ ] Non-breaking change (would not break existing functionality)
[x] Breaking change (would cause existing functionality to change)
[x] Tests added or modified to cover the changes
[x] Integration tests passed locally by running pytest
[x] In-line docstrings updated
[x] Documentation updated, tested running make html inside the docs/ folder
Fixes #81
Description
This pull request standardizes the use of axes in random transforms. It also adds random axes options in the
RandomMotion
transform. Includes the following changes:to_tuple
to see strings as singular values (this also required adding number of changes to checks for strings in areas where numbers are necessary). Tests all pass.parse_axes
andensure_axes_indices
to baseTransform
class. Standardizes the use of axes in all transforms. Capable of accepting integer and specific string axis values. This is now used inRandomFlip
,RandomMotion
,RandomGhosting
,RandomAnisotropy
. Tests were added to check these additional axis values.RandomMotion
. This now works properly on 2D images and can apply motion to any axis of 3D images. Also removed redundant change between matrix and transform.Checklist
CONTRIBUTING
docs and have a developer setup (especially important arepre-commit
andpytest
)pytest
make html
inside thedocs/
folder