Closed mptrsen closed 6 months ago
Hello! I can't reproduce the error on my system. But in the long error output, it seems like you have no system-wide python installation? I'm not sure how to solve this. However, it seems like something else is broken in the conda installation of julia anyways; for the latest julia version (1.8.2), I am missing some certificate files when installing with conda. The alternative would be to not use a conda environment but instead download julia and diamond like so:
wget https://julialang-s3.julialang.org/bin/linux/x64/1.8/julia-1.8.2-linux-x86_64.tar.gz
tar -xzf julia-1.8.2-linux-x86_64.tar.gz
(julia version 1.8.2 for Linux)
wget http://github.com/bbuchfink/diamond/releases/download/v2.0.13/diamond-linux64.tar.gz
tar xzf diamond-linux64.tar.gz
(diamond version 2.0.13 for Linux)
Make sure that both programs are in your $PATH
variable so that you can call them from the terminal. I should add that Patchwork's main branch might be broken right now, but that's an issue I'm currently solving.
The main branch should work again now, just so you know.
Installation with dependencies from Conda according to the instructions fails at the
Pkg.instantiate()
step. Long error output here. Perhaps the issue is that the distutils package is deprecated and the submodule sysconfig wasn't found: