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fgcz / prolfqua

Differential Expression Analysis tool box R lang package for omics data
https://pubs.acs.org/doi/pdf/10.1021/acs.jproteome.2c00441
MIT License
40 stars 7 forks source link

manage bioc submission #21

Closed cpanse closed 2 years ago

cpanse commented 3 years ago
wolski commented 2 years ago 
> eh  = ExperimentHub()
snapshotDate(): 2021-08-09
> query(eh, "prolfqua")
ExperimentHub with 22 records
# snapshotDate(): 2021-08-09
# $dataprovider: Functional Genomics Center Zurich (FGCZ), http://proteomece...
# $species: Saccharomyces cerevisiae
# $rdataclass: data.frame
# additional mcols(): taxonomyid, genome, description,
#   coordinate_1_based, maintainer, rdatadateadded, preparerclass, tags,
#   rdatapath, sourceurl, sourcetype
# retrieve records with, e.g., 'object[["EH6084"]]'

           title                                              
  EH6084 | Experiment annotation for p2370                    
  EH6085 | Experiment annotation for p2691                    
  EH6086 | Experiment annotation for PXD003881                
  EH6087 | MaxQuant small txt files for p2370                
  EH6088 | MaxQuant small txt files for p2691                
  ...      ...                                                
  EH6717 | MSFragger txt files  for PXD003881                
  EH6718 | MaxQuant small txt files for UPS_PXD002370_Ratio2.5
  EH6719 | MaxQuant small txt files for UPS_PXD002370_Ratio2  
  EH6720 | Experiment annotation for PXD002370 Ratio 2.5      
  EH6721 | Experiment annotation for PXD002370 Ratio 2        
> temp = eh[["EH6719"]]
> temp