tidyMQ_ProteinGroups fiunction is not working

fgcz / prolfqua

Differential Expression Analysis tool box R lang package for omics data

https://pubs.acs.org/doi/pdf/10.1021/acs.jproteome.2c00441

MIT License

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tidyMQ_ProteinGroups fiunction is not working #77

Closed animesh closed 2 months ago

animesh commented 2 months ago

I am trying to import MaxQuant output proteinGroups.txt using https://fgcz.github.io/prolfqua/articles/Comparing2Groups.html but facing Error: 'tidyMQ_ProteinGroups' is not an exported object from 'namespace:prolfqua' ?

jjGG commented 2 months ago

Hello Animesh, This function is meanwhile "out-sourced" to prolfquapp. This package builds on top of prolfqua for nice reports. Check-it out. If loaded, the function will work as described.

remotes::install_github('wolski/prolfquapp', dependencies = TRUE, force = FALSE)

cheers - jonas

wolski commented 2 months ago

Hello Animish, Yes, we are moving the Maxquant, DIA-NN, Spectronaut, etc, specific code to prolfquapp. https://github.com/prolfqua/prolfquapp

best regards

animesh commented 2 months ago

Thats great guys, will check it out 🤞 thanks 👍🏽