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fgcz / prolfqua

Differential Expression Analysis tool box R lang package for omics data
https://pubs.acs.org/doi/pdf/10.1021/acs.jproteome.2c00441
MIT License
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prolfqua_merged Vignette DIA-NN Output #92

Open abadgerw opened 3 weeks ago

abadgerw commented 3 weeks ago

@wolski Thank you for such a great package! I just wanted to see if you could point me in the right direction of using prolfqua_merged on my DIA-NN output file?

abadgerw commented 2 weeks ago

@wolski I just wanted to circle back and see if you had some insight into this query as I'd love to be able to use your fantastic tool?

abadgerw commented 4 days ago

@wolski Hope you are doing well. I wanted to check in and see if you had a chance to review my query so that I may utilize your wonderful tool?

wolski commented 12 hours ago

@abadgerw I'm sorry for not replying earlier. Unfortunately, since the end of July, the email notifications from Git Hub have been in my email client's spam folder.

Did you have a look at this vignette?

https://fgcz.github.io/prolfqua/articles/CreatingConfigurations.html

Also, have a look at this discussion: https://github.com/fgcz/prolfqua/discussions/85

Also, we now have a bioarxv preprint, which describes a command line interface to prolfqua. There, you have out-of-the-box DIA-NN support.