supported std. peptides

fgcz / rawDiag

Brings Orbitrap mass spectrometry data to life; multi-platform, fast and colorful R package

https://bioconductor.org/packages/rawDiag

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supported std. peptides #38

Open tobiasko opened 5 years ago

tobiasko commented 5 years ago

So far rawDiag supports:

iRT (Biognosys)
6 x 5 LC-MS/MS Peptide Ref. Mix (Promega)
MSQC1 (Sigma)

Are there other peptide sets that could make sense?

PROCAL Zolg, D. P., Wilhelm, M., Yu, P., Knaute, T., Zerweck, J., Wenschuh, H., et al. (2017). PROCAL: A Set of 40 Peptide Standards for Retention Time Indexing, Column Performance Monitoring, and Collision Energy Calibration. Proteomics, 17(21), 1700263. http://doi.org/10.1002/pmic.201700263

JPT product

tobiasko commented 5 years ago

CiRT Parker, S. J., Röst, H., Rosenberger, G., Collins, B. C., Malmström, L., Amodei, D., et al. (2015). Identification of a Set of Conserved Eukaryotic Internal Retention Time Standards for Data-independent Acquisition Mass Spectrometry. Molecular & Cellular Proteomics : MCP, 14(10), 2800–2813. http://doi.org/10.1074/mcp.O114.042267