fgcz / rawDiag

Brings Orbitrap mass spectrometry data to life; multi-platform, fast and colorful R package
https://bioconductor.org/packages/rawDiag
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unit test data #40

Open tobiasko opened 5 years ago

tobiasko commented 5 years ago

I created some raw files that could be used for unit testing.

a) Calibration mix recording on a FUSION (profile & centroid mode) using direct infusion (no LC seperation!)

Pierce LTQ Velos ESI Positive Calibration Solution, Product number: 88323 product homepage Certificate of analysis

Could be used to test basic functions like:

FUSION1_calMix.zip

MSScan_Orbi_centroid.raw contains 50 scan of type FTMS + c ESI Full ms [150.0000-2000.2000]

scan #50 looks like this in FreeStyle 1.4 (uses RawFileReader) image

The file header contains FileHeader_MSScan_Orbi_centroid.txt

The profile mode file is structured accordingly and displays like this for scan 2 image

tobiasko commented 5 years ago

more unit test data

FUSION2.zip

files contain the following scan modes recorded on a FUSION using nanospray ionisation (no sample, just solvent):

ITMS + c NSI r Full ms2 445.1100@hcd30.00 [150.0000-2000.0000] FTMS + c NSI Full ms2 445.1100@hcd30.00 [150.0000-2000.0000] FTMS + p NSI Full ms2 445.1100@hcd30.00 [150.0000-2000.0000] ITMS + c NSI Full ms [300.0000-2000.0000] ITMS + p NSI Full ms [300.0000-2000.0000] FTMS + c NSI Full ms [300.0000-2000.0000] FTMS + p NSI Full ms [300.0000-2000.0000] FTMS + c NSI SIM ms [435.1100-455.1100] FTMS + p NSI SIM ms [435.1100-455.1100]