fgcz / rawDiag

Brings Orbitrap mass spectrometry data to life; multi-platform, fast and colorful R package
https://bioconductor.org/packages/rawDiag
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Problems with the read.raw() #77

Open georgiaAngelidou opened 1 year ago

georgiaAngelidou commented 1 year ago

Hello,

I recently installed the rawDiag, and after trying to run some tests, I am having problems with the read.raw() function. I tried to look around to solve it, but I didn't succeed. I even downloaded the ThermoFisher files hoping to solve this problem, but I needed to figure out which location to put them so I would not have any problem with the function.

If you need any further information, please let me know.

The error message is:

Unhandled Exception: System.IO.FileNotFoundException: Could not load file or assembly 'ThermoFisher.CommonCore.Data, Version=1.0.0.0, Culture=neutral, PublicKeyToken=1aef06afb5abd953' or one of its dependencies. The system cannot find the file specified. at FGCZ_Raw.Program.Main(String[] args) missing column name(s): filename, scanNumber, StartTime, BasePeakMass, BasePeakIntensity, TIC, ScanType, CycleNumber, MSOrder, MassAnalyzer, PrecursorMass, ChargeState, IonInjectionTimems, FTResolution, MasterScanNumber, LMCorrection, ElapsedScanTimesec, transient, AGC, AGCMode, PrescanMode MasterScanNumber calculated Error in UseMethod("mutate") : no applicable method for 'mutate' applied to an object of class "NULL" Timing stopped at: 0.04 0 0.45

Thank you.

Best regards, Georgia