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fgvieira / ngsF-HMM

Estimation of per-individual inbreeding tracts under a probabilistic framework
GNU General Public License v3.0
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Trouble about input format #5

Open zax-bioinforer opened 3 years ago

zax-bioinforer commented 3 years ago

Hi,fgvieira！there is something confusing for me. I am estimating the divergence time of microarray data，so I choose ngsF-HMM to do. this is my code ： ngsF-HMM --geno geno.tsv.gz --pos pos.txt --n_ind 53 --n_sites 53827 --out test

and it tells me： [read_geno] wrong GENO file format. Less fields than expected!

my --geno file format is a matrix ，columns represent samples；rows represents sites， and genotypes are coded as {0，1，2}.

I can't tell what is the reason it went wrong.

Is it possible that you can send me a format.

fgvieira commented 3 years ago

Can you send me a small test case? For example, the first 100 or 1000 lines of files geno.tsv.gz and pos.txt.