Deenurp issue27 - Githubissues

fhcrc / deenurp

16S rRNA gene sequence curation and phylogenetic reference set creation

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Closed crosenth closed 9 years ago

crosenth commented 9 years ago

deenurp rdp_extract_sequences now updates old tax_ids instead of dropping them (issue: 27)
deenurp rdp_extract_sequences creates new column is_classified instead of dropping tax_ids of unclassified sequences (issue: 28)
function tax_of_genbank no longer returns None if string 'uncultured bacterium' is in the organism name (issue: 29)

crosenth commented 9 years ago

Also includes updates for issues 28 and 29.