add command line option for defining outlier clusters

fhcrc / deenurp

16S rRNA gene sequence curation and phylogenetic reference set creation

GNU General Public License v3.0

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add command line option for defining outlier clusters #58

Open nhoffman opened 7 years ago

nhoffman commented 7 years ago

See https://github.com/fhcrc/deenurp/blob/master/deenurp/subcommands/filter_outliers.py#L399

Within subcommands.filter_outliers.filter_sequences(), outliers.outliers_by_cluster() is called with D=1.5 hard-coded. This should be a parameter that can be passed all the way down from the command line.