Open nhoffman opened 7 years ago
See https://github.com/fhcrc/deenurp/blob/master/deenurp/subcommands/filter_outliers.py#L399
Within subcommands.filter_outliers.filter_sequences(), outliers.outliers_by_cluster() is called with D=1.5 hard-coded. This should be a parameter that can be passed all the way down from the command line.
D=1.5
See https://github.com/fhcrc/deenurp/blob/master/deenurp/subcommands/filter_outliers.py#L399
Within subcommands.filter_outliers.filter_sequences(), outliers.outliers_by_cluster() is called with
D=1.5
hard-coded. This should be a parameter that can be passed all the way down from the command line.