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fhcrc / deenurp

16S rRNA gene sequence curation and phylogenetic reference set creation
GNU General Public License v3.0
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Remove Peasel dependency #66

Closed crosenth closed 4 years ago

crosenth commented 5 years ago

Peasel is not being actively developed or supported anymore. We should consider using a different fasta indexing library or just write the sequences into a dictionary in memory

@nhoffman

nhoffman commented 5 years ago

Let's check out https://pypi.org/project/pyfaidx/

crosenth commented 4 years ago

https://github.com/fhcrc/deenurp/pull/67