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fhcrc / deenurp

16S rRNA gene sequence curation and phylogenetic reference set creation
GNU General Public License v3.0
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04 infernal1.1 #7

Closed nhoffman closed 10 years ago

nhoffman commented 10 years ago

Untested with MPI - we may still want to remove MPI support rather than worry about it. Also, cmalign 1.1 uses all available cores unless a smaller number is specified. We may want to limit that either optionally or by default.

cmccoy commented 10 years ago

@nhoffman: would it be possible to default to 1 CPU? Parallelism in deenurp is at the species/OTU level, so using all CPUs by default will conflict with the argument to --threads.

nhoffman commented 10 years ago

@cmccoy - defaulted cmalign to 1 cpu as you suggested.

cmccoy commented 10 years ago

Merged, thanks!