Port Seq.ungap call to Biopython 1.80.

fhcrc / seqmagick

An imagemagick-like frontend to Biopython SeqIO

http://seqmagick.readthedocs.org

GNU General Public License v3.0

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Port Seq.ungap call to Biopython 1.80. #101

Closed emollier closed 8 months ago

emollier commented 8 months ago

Since Biopython 1.80, the call to Seq.ungap(gap) is deprecated and replaced by Seq.replace(gap, ''). Sticking to ungap is currently causing Debian bug #1066772. This change allows running ungap workloads with Biopython versions 1.80 and newer.

jgallowa07 commented 8 months ago

Looks great, thanks @emollier !