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fhcrc / seqmagick

An imagemagick-like frontend to Biopython SeqIO
http://seqmagick.readthedocs.org
GNU General Public License v3.0
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problems writing nexus #23

Closed gh-owestesson closed 13 years ago

gh-owestesson commented 13 years ago

Tried to convert stockholm to nexus with convert testing/protein.stk this.nex --input-format stockholm --output-format nexus

And got this error: ValueError: Need a DNA, RNA or Protein alphabet

cmccoy commented 13 years ago

This should be fixed (works for me, at least) as of 93aff8731d5fd5705a59b7818cd3f88d5f844e0b, though you'll need to specify an alphabet with --alphabet. Care to give it a try?

gh-owestesson commented 13 years ago

Great, thanks!