how to translate into 6 frames ?

fhcrc / seqmagick

An imagemagick-like frontend to Biopython SeqIO

http://seqmagick.readthedocs.org

GNU General Public License v3.0

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how to translate into 6 frames ? #46

Closed lmanchon closed 9 years ago

lmanchon commented 9 years ago

-hi,

./seqmagick convert --translate dna2protein test.fasta out.fasta

convert only into 1 frame. is there option to translate into 6 frames ?

thx

matsen commented 9 years ago

I'm afraid that this operation isn't supported by seqmagick, and we don't have anything else that does single-in multiple-out, so I don't see it being supported in the future.

We have liked the EMBOSS tools getorf and sixpack.