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fhcrc / seqmagick

An imagemagick-like frontend to Biopython SeqIO
http://seqmagick.readthedocs.org
GNU General Public License v3.0
113 stars 22 forks source link

SIGPIPE problem in Windows #58

Open katieMlyons opened 8 years ago

katieMlyons commented 8 years ago

Not sure if Windows support is a priority but:

seqmagick info s20dataonly.snps Traceback (most recent call last): File "c:\users\katie\anaconda3\envs\py27\lib\runpy.py", line 162, in _run_module_as_main "main", fname, loader, pkg_name) File "c:\users\katie\anaconda3\envs\py27\lib\runpy.py", line 72, in _run_code exec code in run_globals File "C:\Users\Katie\Anaconda3\envs\py27\Scripts\seqmagick.exemain.py", line 9, in File "c:\users\katie\anaconda3\envs\py27\lib\site-packages\seqmagick\scripts\cli.py", line 29, in main return action(arguments) File "c:\users\katie\anaconda3\envs\py27\lib\site-packages\seqmagick\subcommands\info.py", line 153, in action common.exit_on_sigpipe() File "c:\users\katie\anaconda3\envs\py27\lib\site-packages\seqmagick\subcommands\common.py", line 212, in exit_on_sigpipe _exit_on_signal(signal.SIGPIPE, status) AttributeError: 'module' object has no attribute 'SIGPIPE'

Thanks!

matsen commented 8 years ago

Gee, sorry, none of us run Windows.

However, are you running Python 3? Seqmagick is Python 2.

katieMlyons commented 8 years ago

I opened a Python 2 environment both to install and attempt to run seqmagick. I run it on all my other non-Windows machines so it's not a priority for me, but I thought you should know.

Katie

On Wed, Jun 29, 2016 at 3:05 PM Erick Matsen notifications@github.com wrote:

Gee, sorry, none of us run Windows.

However, are you running Python 3? Seqmagick is Python 2.

— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub https://github.com/fhcrc/seqmagick/issues/58#issuecomment-229471983, or mute the thread https://github.com/notifications/unsubscribe/AFaqUhiT_AeEELD10dugFVJKcJ7OhgKYks5qQs_ygaJpZM4JBZbQ .