fhcrc / taxtastic

Create and maintain phylogenetic "reference packages" of biological sequences.
GNU General Public License v3.0
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taxtable column order must be tax_id, parent_id, rank, tax_name, ranks #104

Closed nhoffman closed 7 years ago

nhoffman commented 7 years ago

@crosenth - guppy classify treats columns of the taxtable as order dependent. Column order must be

tax_id, parent_id, rank, tax_name, ranks...

The current output breaks pplacer/guppy

crosenth commented 7 years ago

https://github.com/fhcrc/taxtastic/blob/master/taxtastic/subcommands/taxtable.py#L239