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fhcrc / taxtastic

Create and maintain phylogenetic "reference packages" of biological sequences.
GNU General Public License v3.0
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Add tree model (.bestModel) to taxit create refpkg creation #145

Closed crosenth closed 3 years ago

crosenth commented 3 years ago

Example .bestModel file looks like this:

% cat sequences.fa.raxml.bestModel
GTR{0.001000/0.001000/0.017297/0.223020/0.001000/1.000000}+FU{0.247527/0.167432/0.403253/0.181789}+G4m{99.858169}, noname = 1-10
crosenth commented 3 years ago

https://github.com/fhcrc/taxtastic/commit/87902f980cb9ebbad92304563e17ff5956ecacf7

crosenth commented 3 years ago

Used as input by epa-ng (epa-ng --model) and RAxML-ng (raxml-ng --model) and for placements and optimizations