pplacer error when using taxtastic refpkg

fhcrc / taxtastic

Create and maintain phylogenetic "reference packages" of biological sequences.

GNU General Public License v3.0

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Closed yifeng-evo closed 1 year ago

yifeng-evo commented 1 year ago

Hello,

I built a refpkg with taxtastic, but when I run pplacer -c refpkg alignments.sto, I saw an error message

Uncaught exception: Simple_json.Undefined_key("n_cats")
Fatal error: exception Simple_json.Undefined_key("n_cats")

Could you please let me know how I can solve this? Thank you!

nhoffman commented 1 year ago

I'm afraid this is a pplacer error that would be better discussed in that repo: https://github.com/matsen/pplacer

I also suspect you'll need to provide a bit more information...