use pandas.read_sql_table for update_taxids and is_classified

fhcrc / taxtastic

Create and maintain phylogenetic "reference packages" of biological sequences.

GNU General Public License v3.0

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use pandas.read_sql_table for update_taxids and is_classified #78

Closed crosenth closed 7 years ago

crosenth commented 8 years ago

updating of tax_ids and searching using --name-column has sped up. --taxid-classified and --append-lineage still need work. Optimizing the database construction taxit new_database will help with this.