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fhcrc / taxtastic

Create and maintain phylogenetic "reference packages" of biological sequences.
GNU General Public License v3.0
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running taxit error. pkg_resources.DistributionNotFound: xlrd #88

Closed blancaverag closed 6 years ago

blancaverag commented 7 years ago

When running taxit I am encountering the following error. taxit Traceback (most recent call last): File "/usr/local/bin/taxit", line 4, in import pkg_resources File "/usr/lib/python2.7/site-packages/pkg_resources.py", line 2805, in working_set.require(requires) File "/usr/lib/python2.7/site-packages/pkg_resources.py", line 696, in require needed = self.resolve(parse_requirements(requirements)) File "/usr/lib/python2.7/site-packages/pkg_resources.py", line 594, in resolve raise DistributionNotFound(req) pkg_resources.DistributionNotFound: xlrd

The output of the locate command shows it is in more than one place: /usr/local/bin/anaconda/lib/python2.7/site-packages/xlrd; /usr/local/bin/anaconda/pkgs/xlrd-0.9.3-py27_0; /usr/share/doc/python-xlrd-0.6.1

Any idea of how to solve this? Thank you!

crosenth commented 7 years ago

Hi blancaverag,

Sorry to be just getting around to this. Are you still having issues running taxit?

Chris

blancaverag commented 7 years ago

Hi Chris,

Yes, I do. Any ideas?

Thank you!

2017-04-20 23:24 GMT+02:00 Chris Rosenthal notifications@github.com:

Hi blancaverag,

Sorry to be just getting around to this. Are you still having issues running taxit?

Chris

— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub https://github.com/fhcrc/taxtastic/issues/88#issuecomment-295920522, or mute the thread https://github.com/notifications/unsubscribe-auth/AQYbhZcV2jjK8i7FQN7JhphVfEQVeZT3ks5rx80VgaJpZM4KlcqY .

nhoffman commented 6 years ago

I'm guessing you've moved on from this, but Please repoen if there are problems with the latest version.