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fhormoz / caviar

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analysis per gene is it? #19

Closed complexgenome closed 3 years ago

complexgenome commented 4 years ago

hello devs,

I understand ecaviar is awesome, works fast. However, the input data eQTL and GWAS are per gene? If I have 20 genes, I believe ecaviar isn't scalable?

edit: ecaviar

fhormoz commented 3 years ago

You need to run eCAVIAR per gene. However, as each gene are independent you can run each gene on a different machine, thus, very easy to run on cluster that have multiple CPUs.