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fiberseq
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FIRE
A Snakemake workflow for calling Fiber-seq Inferred Regulatory Elements (FIREs) on single molecules.
https://fiberseq.github.io/FIRE/
MIT License
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Development branch for the next release
#29
mrvollger
opened
1 week ago
0
Different #peaks in 'peaks-vs-percent.pdf'
#28
RisaWatanabe
opened
1 week ago
3
Difference in number of FIRE peaks in 'aligned data' vs 'align+phased data' from the same k-mer-variant-phasing run
#27
RisaWatanabe
closed
1 week ago
2
seed option for 'bedtools shuffle' in FDR-peaks.smk
#26
RisaWatanabe
opened
1 week ago
2
Issues with new update
#25
dverac
closed
2 weeks ago
1
Output model.results.bed.gz
#24
ywang285
closed
1 month ago
3
denovo asm improvements
#23
mrvollger
closed
2 months ago
0
Another small coverage patch
#22
mrvollger
closed
2 months ago
0
FIRE element size distribution
#21
ywang285
closed
2 months ago
1
Typo for installing snakemake executor plugin
#20
tbenavi1
closed
2 months ago
2
bad links
#19
kerrybubb
closed
2 months ago
1
remove d4tools
#18
mrvollger
closed
2 months ago
0
Targeted
#17
mrvollger
closed
2 months ago
0
Error message with latest FIRE: polars.exceptions.ComputeError: cannot sort column of dtype `null`
#16
ywang285
closed
2 months ago
3
Targeted
#15
mrvollger
closed
2 months ago
0
FIX: Fibers without FIRE elements were not included in the FDR calculation
#14
mrvollger
closed
3 months ago
0
FDR and track calculation error
#13
mrvollger
closed
3 months ago
3
TypeError: can only concatenate str (not "list") to str
#12
mzaran-altius
closed
3 months ago
5
Update to snakemake v8
#11
mrvollger
closed
5 months ago
0
Questions about FIRE installation
#10
dverac
closed
5 months ago
9
Questions about FIRE and ft add-nucleosomes
#9
ywang285
closed
4 months ago
2
Fir ev2.0
#8
mrvollger
closed
6 months ago
0
FIRE on targeted seq data: fiber-locations-shuffled.bed.gz is created empty
#7
Strausyatina
opened
6 months ago
7
FIRE v2
#6
mrvollger
closed
6 months ago
0
Order of phasing and fibertools
#5
tbenavi1
closed
7 months ago
2
modwt required but not mentioned in README
#4
MorganHamm
closed
8 months ago
1
Fixed error in FDR-peaks and track-hub
#3
StephanieBohaczuk
closed
8 months ago
0
Error in rule wide_fdr_peaks
#2
StephanieBohaczuk
closed
8 months ago
1
New peak caller
#1
mrvollger
closed
8 months ago
0