I tried to run snakemake with a ccs file that did not have a .pbi file. I got the following error:
NameError in line 19 of fiberseq-smk/workflow/Snakefile:
name 'subreads' is not defined
I think this should have resulted in an error like this though: "pbi for input_ccs.bam does not exist".
I think line 19 of workflow/Snakefile should be changed from:
assert os.path.exists(f"{input_ccs}.pbi"), f"pbi for {subreads} does not exist"
to:
assert os.path.exists(f"{input_ccs}.pbi"), f"pbi for {input_ccs} does not exist"
I tried to run snakemake with a ccs file that did not have a .pbi file. I got the following error:
NameError in line 19 of fiberseq-smk/workflow/Snakefile: name 'subreads' is not defined
I think this should have resulted in an error like this though: "pbi for input_ccs.bam does not exist".
I think line 19 of workflow/Snakefile should be changed from: assert os.path.exists(f"{input_ccs}.pbi"), f"pbi for {subreads} does not exist" to: assert os.path.exists(f"{input_ccs}.pbi"), f"pbi for {input_ccs} does not exist"