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fiererlab / dada2_fiererlab

A big data version of dada2 pipeline for processing high throughput amplicon data for the Fierer lab. NOTE: the original repository hosted by Angela Oliverio (amoliverio) is no longer being updated. Please return to this page for updates.
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Add instructions to end of tutorial about how to format for phyloseq? #26

Closed clairecwinfrey closed 2 days ago

clairecwinfrey commented 2 years ago

Phyloseq allows you to create and easily manipulate an object that contains an ASV table, metadata, taxonomy table, and (optionally) a tree. I've found that it makes microbiome analysis more straightforward, especially when I didn't know how to use tidy verse tools. Would it be helpful for me to add optional code at the end of tutorial for getting data formatted for phyloseq?

cliffbueno commented 3 weeks ago

yes, that could go below the mctoolsr formatting part.

cliffbueno commented 2 days ago

Added a small bit of example code to make a phyloseq object in Version 2.0.0.