Using Correct_3d_drift on .tif files

fiji / Correct_3D_Drift

https://imagej.net/plugins/correct-3d-drift

GNU General Public License v3.0

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Using Correct_3d_drift on .tif files #6

Closed akatav closed 4 years ago

akatav commented 4 years ago

I have .tif files captured on a field of view of mouse brain using 2d photon microscopy. There is no time axis for now. Each frame in the .tif file represents the tissue at a depth 'z'. These frames are not aligned properly. Can i use your tool to align such frames?

tischi commented 4 years ago

Thank you for the question. May I please ask you to ask this question on www.image.sc? Please, in your post write @Christian_Tischer, this will notify me. Already to answer, I think tools like https://imagej.net/StackReg might be better suited for your data.

akatav commented 4 years ago

@tischi i have already raised a question on image.sc - https://forum.image.sc/t/align-frames-in-tiff-file-derived-from-2d-photon-microscopy-of-rat-brain/33930 My images are from a live animal with motion artifacts. I am not sure if StackReg or TurboReg can register images from different FOVs along the axial plane, in this case.