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fiji / FilamentDetector

A Fiji plugin that allows easy, fast and accurate detection and tracking of biological filaments.
https://imagej.net/FilamentDetector
MIT License
6 stars 2 forks source link

RuntimeException when running on MacOS #19

Open amedyukhina opened 4 years ago

amedyukhina commented 4 years ago

Hi, I wanted to try out your plugin, but I get an error when starting it.

This is what I get in the Exception window:

(Fiji Is Just) ImageJ 2.0.0-rc-69/1.52p; Java 1.8.0_202 [64-bit]; Mac OS X 10.14.6; 208MB of 10667MB (1%)

java.lang.RuntimeException: java.util.concurrent.ExecutionException: java.lang.NoClassDefFoundError: javafx/embed/swing/JFXPanel
    at net.imagej.legacy.LegacyService.runLegacyCompatibleCommand(LegacyService.java:309)
    at net.imagej.legacy.DefaultLegacyHooks.interceptRunPlugIn(DefaultLegacyHooks.java:163)
    at ij.IJ.runPlugIn(IJ.java)
    at ij.Executer.runCommand(Executer.java:137)
    at ij.Executer.run(Executer.java:66)
    at java.lang.Thread.run(Thread.java:748)
Caused by: java.util.concurrent.ExecutionException: java.lang.NoClassDefFoundError: javafx/embed/swing/JFXPanel
    at java.util.concurrent.FutureTask.report(FutureTask.java:122)
    at java.util.concurrent.FutureTask.get(FutureTask.java:192)
    at net.imagej.legacy.LegacyService.runLegacyCompatibleCommand(LegacyService.java:305)
    ... 5 more
Caused by: java.lang.NoClassDefFoundError: javafx/embed/swing/JFXPanel
    at sc.fiji.filamentdetector.FilamentDetectorPlugin.run(FilamentDetectorPlugin.java:72)
    at org.scijava.command.CommandModule.run(CommandModule.java:199)
    at org.scijava.module.ModuleRunner.run(ModuleRunner.java:168)
    at org.scijava.module.ModuleRunner.call(ModuleRunner.java:127)
    at org.scijava.module.ModuleRunner.call(ModuleRunner.java:66)
    at org.scijava.thread.DefaultThreadService.lambda$wrap$2(DefaultThreadService.java:228)
    at java.util.concurrent.FutureTask.run(FutureTask.java:266)
    at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
    at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
    ... 1 more
Caused by: java.lang.ClassNotFoundException: javafx.embed.swing.JFXPanel
    at java.net.URLClassLoader.findClass(URLClassLoader.java:382)
    at java.lang.ClassLoader.loadClass(ClassLoader.java:424)
    at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:349)
    at java.lang.ClassLoader.loadClass(ClassLoader.java:357)
    ... 10 more

And is what is printed in the Console:

[INFO] Running FilamentDetector version 0.4.8
[ERROR] Module threw error
java.lang.NoClassDefFoundError: javafx/embed/swing/JFXPanel
    at sc.fiji.filamentdetector.FilamentDetectorPlugin.run(FilamentDetectorPlugin.java:72)
    at org.scijava.command.CommandModule.run(CommandModule.java:199)
    at org.scijava.module.ModuleRunner.run(ModuleRunner.java:168)
    at org.scijava.module.ModuleRunner.call(ModuleRunner.java:127)
    at org.scijava.module.ModuleRunner.call(ModuleRunner.java:66)
    at org.scijava.thread.DefaultThreadService.lambda$wrap$2(DefaultThreadService.java:228)
    at java.util.concurrent.FutureTask.run(FutureTask.java:266)
    at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
    at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
    at java.lang.Thread.run(Thread.java:748)
Caused by: java.lang.ClassNotFoundException: javafx.embed.swing.JFXPanel
    at java.net.URLClassLoader.findClass(URLClassLoader.java:382)
    at java.lang.ClassLoader.loadClass(ClassLoader.java:424)
    at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:349)
    at java.lang.ClassLoader.loadClass(ClassLoader.java:357)
    ... 10 more
paulruijgrok commented 4 years ago

I ran into the exact same issue, also on ImageJ 2.0.0-rc-69/1.52p; Java 1.8.0_202 [64-bit]; Mac OS X 10.14.6.

java.lang.RuntimeException:` java.util.concurrent.ExecutionException: java.lang.NoClassDefFoundError: javafx/embed/swing/JFXPanel
    at net.imagej.legacy.LegacyService.runLegacyCompatibleCommand(LegacyService.java:309)
    at net.imagej.legacy.DefaultLegacyHooks.interceptRunPlugIn(DefaultLegacyHooks.java:163)
    at ij.IJ.runPlugIn(IJ.java)
    at ij.Executer.runCommand(Executer.java:137)
    at ij.Executer.run(Executer.java:66)
    at java.lang.Thread.run(Thread.java:748)ja
Caused by: java.util.concurrent.ExecutionException: java.lang.NoClassDefFoundError: javafx/embed/swing/JFXPanel
    at java.util.concurrent.FutureTask.report(FutureTask.java:122)
    at java.util.concurrent.FutureTask.get(FutureTask.java:192)
    at net.imagej.legacy.LegacyService.runLegacyCompatibleCommand(LegacyService.java:305)
    ... 5 more
Caused by: java.lang.NoClassDefFoundError: javafx/embed/swing/JFXPanel
    at sc.fiji.filamentdetector.FilamentDetectorPlugin.run(FilamentDetectorPlugin.java:72)
    at org.scijava.command.CommandModule.run(CommandModule.java:199)
    at org.scijava.module.ModuleRunner.run(ModuleRunner.java:168)
    at org.scijava.module.ModuleRunner.call(ModuleRunner.java:127)
    at org.scijava.module.ModuleRunner.call(ModuleRunner.java:66)
    at org.scijava.thread.DefaultThreadService.lambda$wrap$2(DefaultThreadService.java:228)
    at java.util.concurrent.FutureTask.run(FutureTask.java:266)
    at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
    at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
    ... 1 more
Caused by: java.lang.ClassNotFoundException: javafx.embed.swing.JFXPanel
    at java.net.URLClassLoader.findClass(URLClassLoader.java:382)
    at java.lang.ClassLoader.loadClass(ClassLoader.java:424)
    at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:349)
    at java.lang.ClassLoader.loadClass(ClassLoader.java:357)
    ... 10 more

[Wed May 13 13:26:25 PDT 2020] [INFO] [] Running FilamentDetector version 0.4.8
[Wed May 13 13:26:25 PDT 2020] [ERROR] [] Module threw error
java.lang.NoClassDefFoundError: javafx/embed/swing/JFXPanel
    at sc.fiji.filamentdetector.FilamentDetectorPlugin.run(FilamentDetectorPlugin.java:72)
    at org.scijava.command.CommandModule.run(CommandModule.java:199)
    at org.scijava.module.ModuleRunner.run(ModuleRunner.java:168)
    at org.scijava.module.ModuleRunner.call(ModuleRunner.java:127)
    at org.scijava.module.ModuleRunner.call(ModuleRunner.java:66)
    at org.scijava.thread.DefaultThreadService.lambda$wrap$2(DefaultThreadService.java:228)
    at java.util.concurrent.FutureTask.run(FutureTask.java:266)
    at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
    at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
    at java.lang.Thread.run(Thread.java:748)
Caused by: java.lang.ClassNotFoundException: javafx.embed.swing.JFXPanel
    at java.net.URLClassLoader.findClass(URLClassLoader.java:382)
    at java.lang.ClassLoader.loadClass(ClassLoader.java:424)
    at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:349)
    at java.lang.ClassLoader.loadClass(ClassLoader.java:357)
    ... 10 more
hadim commented 4 years ago

I am not developing this plugin anymore and haven't touched it for a while.

The error looks like JavaFX is not present on your Java installation. JavaFX is required for the plugin to work (it provides the GUI).

I remember that was an issue already when I was developing the plugin. See there for details: https://forum.image.sc/t/fiji-wont-start-after-adding-an-update-site-filamentdetector/10436/8

Hope it helps!