As is, the "include all paths" option in the Sholl Analysis dialog assumes that the soma has been traced as a single point (zero-length path). This is rather restrictive and not recommended. It would be desirable to allow users to filter out somas defined by multiple paths. While at it, we could allow Sholl to be performed on specified paths filtered through SWC types ("soma", "dendrite", "axon", "end point", etc.), which would allow streamlined profiles from specific compartments.
As is, the "include all paths" option in the Sholl Analysis dialog assumes that the soma has been traced as a single point (zero-length path). This is rather restrictive and not recommended. It would be desirable to allow users to filter out somas defined by multiple paths. While at it, we could allow Sholl to be performed on specified paths filtered through SWC types ("soma", "dendrite", "axon", "end point", etc.), which would allow streamlined profiles from specific compartments.
The issue is discussed in this forum thread.