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fiji / SNT

Legacy project superseded by https://github.com/morphonets/SNT
GNU General Public License v3.0
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Soma missing when creating a Tree from filename #63

Closed kephale closed 4 years ago

kephale commented 4 years ago

I'm trying to create a Tree from AA0792.swc, but the soma gets relabeled as an axon after loading. :root #object[sc.fiji.snt.util.PointInImage 0x21440e36 ( 6169.424625, 1550.220808, 4726.28674 ) [onPath Path 0 [axon]]]

tferr commented 4 years ago

@kephale, i think it was never labeled as soma. The way the cells are in the database, the soma is both the first node of the dendritic arbor and the first node of the axonal arbor. It is just telling you that the root is a node of Path 0, of the axon What do you get when you do:

tree = new Tree("/path/to/AA0792.swc");
print(tree.getSomaPosition())

?